Metadata language
Journal of Biotechnology, Computational Biology and Bionanotechnology
Creator:Ślesak, Ireneusz ; Karpiński, Stanisław
Publisher:Komitet Biotechnologii PAN ; Instytut Chemii Bioorganicznej PAN
Date issued/created: Description: Subject and Keywords: Abstract:A quickly increasing amount of biological data, such as DNA/RNA and protein sequences, determines fundamental role of biological databases for functional comparative analysis of genomes/metabolic pathways of various organisms. This is neatly illustrated by ‘Databases’, the new type of scientific Journal that has recently appeared. The Journal is dedicated to bioinformatic data processing and storage. Biological databases and platforms play a crucial role in the development and progress of the systems biology. Systems biology integrates key elements of an organism functions e.g. gene and protein content, regulation of gene expression, enzymes activities, and specific profiles of different metabolites. Therefore, it is possible to generate a holistic and integrated model of basic biological functions and processes that determine an organism phenotype.
References:
Lesk A. M., (2003), Introduction to Bioinformatics, Oxford University Press, 115-159.
Selzer P. M., Marhofer R. J., Rohwer A., (2008), Applied Bioinformatics. An Introduction, Springer-Ver- lag Berlin Heidelberg, 1-30.
Xiong J., (2006), Essential bioinformatics, Cambridge University Press, 63-74.
Mackiewicz P., Zakrzewska-Czerwińska J., Cebrat S., (2005), Biotechnologia, 3, 7-21.
Venter J. C., Adams M. D., Myers E. W., et al., (2001), Science, 291, 1304-1351.
McPherson J. D., Marra M., Hillier L., et al., (2001), Nature, 409, 934-941.
Robbins R. J., (1994), Publishing Research Quarterly, 10, 3-27.
Baxevanis A. D., (2003), Current Protocols in Bioinformatics, john Wiley & Sons, Inc., 1.1.1-1.1.4.
Stein L. D., (2003), Nature Rev. Genet., 4, 337-345.
Selzer P. M., Marhofer R. J., Rohwer A., (2008), Applied Bioinformatics. Art Introduction, Springer-Ver- lag Berlin Heidelberg, 45-74.
Baxevanis A. D., Ouellette B. F. F., (2004), Bioinformatyka, Podręcznik do analizy genów i białek, PWN, Wraszawa, 490.
Higgs P. G., Attwood T. K., (2008), Bioinformatyka i ewolucja molekularna, PWN, Warszawa, 531.
Menlove K.J., Clement M., Crandall K. A., (2009), Bioinformatics for DNA Sequence Analysis. Series: Methods in Molecular Biology, 537, Ed. D. Posada, Humana Press, 1-22.
Galperin M. Y., Cochrane G. R., (2009), Nucleic Acid Res., 37, D1-D4.
Huang S., Ruiqiang Li R., Zhang Z., et al., (2009), Nat. Genet., 41, 1275-1281.
Schnoes A. M., Brown S. D., Dodevski I., Babbitt P.C., (2009), Plos Comput. Biol., 5, 1-13.
Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D.J., (1990), J. Mol. Biol., 215, 403-410.
Altschul S. F., Madden T. L., Schaffer A. A., ZhangJ., Zhang Z., Miller W., Lipman D. J., (1997), Nucleic Acids Res., 25, 3389-3402.
Claverie J-M., Notredame C., (2007), Bioinformatics for dummies, 2"^ ed., Wiley Publishing Inc., 199-234.
Holmes R. M., (2007), A cell biologist’s guide to modeling and bioinformatics, John Wiley & Sons, Inc., 9-34.
Dereeper A., Guignon V., Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J. F., Guindon S., Lefort V., Lescot M., Claverie J. M., Gascuel 0., (2008), Nucleic Acids Res., 36, W465-469.
Edgar R. C., (2004), Nucleic Acids Res., 32, 1792-1797.
Castresana J., (2000), Mol. Biol. EvoL, 17, 540-552.
Hall B. G., (2005), Mol. Biol. EvoL, 22, 792-802.
Hasegawa M., Kishino H., Yano T., (1985), J. Mol. EvoL, 2, 160-174.
Whelan A., Goldman N., (2001), Mol. Biol. EvoL, 18, 691-699.
Anisimova M., Gascuel 0., (2006), Syst. Biol., 55, 539-552.
Karp P. D., Ouzounis C. A., Moore-Kochlac C., Goldovsky L., Kaipa P., Ahren D., Tsoka S., Darzentas N., Kunin V., Lopez-Bigas N., (2005), Nucleic Acids Res., 33, 6083-6089.
Keseler I. M., Bonavides-Martinez C., Collado-Vides J., Gama-Castro S., Gunsalus R. P., Johnson D. A., Krummenacker M., Nolan L. M., Paley S., Paulsen I. T., et al., (2009), Nucleic Acids Res., 37, D464-D470.
Caspi R., Foerster, H., Fulcher C. A., Kaipa P., Krummenacker M., Latendresse M., Paley S., Rhee S.Y., Shearer A., Tissier C., Walk T. C., Zhang P., Karp P. D., (2008), Nucleic Acids Res., 36(1), D623-D631.
Romero P., Waggj., Green M. L., Kaiser D., Krummenacker M., Karp P. D., (2004), Genome Biol., 6, R2.
Valdes J., Veloso F., Jedlicki E., Holmes D., (2003), BMC Genomics, 15, 51.
Yell L, Hanekamp T., Tsoka S., Karp P. D., Altman R. B., (2004), Genome Res., 14, 917-924.
Geisler M., Kleczkowski L. A., Karpiński S., (2006), Plant j., 45, 384-398.
Landsman D. , Gentlemanm R., Kelso j., Ouellette B. F. F., (2009), Database, ID bap002, doi;10.1093/da- tabase/bap002.
de Backer P., Waele D. D., van Speybroeck L., (2010), Acta Biotheor., 58, 15-49.
Biotechnologia, vol.91, 4 (2010)-.
Volume: Issue: Start page: End page: Resource type: Detailed Resource Type: Format: Resource Identifier: Source:Biblioteka Instytutu Chemii Bioorganicznej PAN
Language: Language of abstract: Temporal coverage: Rights:Licencja Creative Commons Uznanie autorstwa-Na tych samych warunkach 4.0
Terms of use: Digitizing institution:Instytut Chemii Bioorganiczneji Polskiej Akademii Nauk
Original in:Instytut Chemii Bioorganiczneji Polskiej Akademii Nauk
Projects co-financed by: Access: